Variant call for oncologic panels
Our variant calling pipeline is adapted for germline or somatic variants from panels, exomes or genomes. To assure the best results, the samples data firstly pass through a rigorous quality control, and the final results are extensively annotated using more than 30 different databases (population frequency, function impact, conservation, COSMIC, ClinVar etc), useful for a better data interpretation.
The results are provided through a variant viewer (ViVa – Viewer of Variants), which is an advanced tool that allows the user to manage the variants and execute complex filterings and/or sample comparisons. A small report is also provided to the user, showing general quality metrics regarding the analyzed samples.